Вопрос жизни. Энергия, эволюция и происхождение сложности - Лейн Николас

Вирусная инфекция и клеточная смерть

Bidle, K. D., and P. G. Falkowski Cell death in planktonic, photosynthetic microorganisms // Nature Reviews Microbiology 2: 643–655 (2004).

Lane, N. Origins of death // Nature 453: 583–585 (2008).

Refardt, D., Bergmiller, T., and R. Kümmerli Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection // Proc. R. Soc. B 280: 20123035 (2013).

Vardi, A., Formiggini, F., Casotti, R., De Martino, A., Ribalet, F., Miralto, A., and C. Bowler A stress surveillance system based on calcium and nitroc oxide in marine diatoms // PLoS Biology 4 (3): e60 (2006).

Соотношение площади поверхности и объема у бактерий

Fenchel, T., and B. J. Finlay Respiration rates in heterotrophic, free-living protozoa // Microbial Ecology 9: 99–122 (1983).

Harold, F. The Vital Force: a Study of Bioenergetics. W. H. Freeman, New York (1986).

Lane, N., and W. Martin The energetics of genome complexity // Nature 467: 929–934 (2010).

Lane, N. Energetics and genetics across the prokaryote-eukaryote divide // Biology Direct 6: 35 (2011).

Makarieva, A. M., Gorshkov, V. G., and B. L. Li Energetics of the smallest: do bacteria breathe at the same rate as whales? // Proc. R. Soc. B 272: 2219–2224 (2005).

Vellai, T., and G. Vida The origin of eukaryotes: the difference between prokaryotic and eukaryotic cells // Proc. R. Soc. B 266: 1571–1577 (1999).

Гигантские бактерии

Angert, E. R. DNA replication and genomic architecture of very large bacteria // Annual Review Microbiology 66: 197–212 (2012).

Mendell, J. E., Clements, K. D., Choat, J. H., and E. R. Extreme polyploidy in a large bacterium // Proceedings National Academy Sciences USA 105: 6730–6734 (2008).

Schulz, H. N., and B. B. Jorgensen Big bacteria // Annual Review Microbiology 55: 105–137 (2001).

Schulz, H. N. The genus Thiomargarita // Prokaryotes 6: 1156–1163 (2006).

Незначительная величина геномов эндосимбионтов и как это сказывается на энергии

Gregory, T. R., and R. DeSalle Comparative genomics in prokaryotes / In: The Evolution of the Genome. Gregory, T. R., ed. Elsevier, San Diego, pp. 585–575 (2005).

Lane, N., and W. Martin The energetics of genome complexity // Nature 467: 929–934 (2010).

Lane, N. Bioenergetic constraints on the evolution of complex life // Cold Spring Harbor Perspectives in Biology, doi: 10.1101/cshperspect.a015982 (2014).

Эндосимбионты в бактериях

Dohlen, C. D. von, Kohler, S., Alsop, S. T., and W. R. McManus Mealybug beta-proteobacterial symbionts contain gamma-proteobacterial symbionts // Nature 412: 433–436 (2001).

Почему у митохондрий сохранились собственные гены

Alberts, A., Johnson, A., Lewis, J., Raff, M., Roberts, K., and P. Walter Molecular Biology of the Cell. 5^th edn. Garland Science, New York (2008).

Allen, J. F. Control of gene expression by redox potential and the requirement for chloroplast and mitochondrial genomes // Journal of Theoretical Biology 165: 609–631 (1993).

Allen, J. F. The function of genomes in bioenergetic organelles // Phil. Trans. R. Soc. B 358: 19–37 (2003).

Gray, M. W., Burger, G., and B. F. Lang Mitochondrial evolution // Science 283: 1476–1481 (1999).

Grey, A. D. de Forces maintaining organellar genomes: is any as strong as genetic code disparity or hydrophobicity? // BioEssays 27: 436–446 (2005).

Полиплоидия у цианобактерий

Griese, M., Lange, C., and J. Soppa Ploidy in cyanobacteria // FEMS Microbiology Letters 323: 124–131 (2011).

Почему на пластиды действуют те же энергетические ограничения, что на бактерии

Lane, N. Bioenergetic constraints on the evolution of complex life // Cold Spring Harbor Perspectives in Biology, doi: 10.1101/cshperspect.a015982 (2014).

Lane, N. Energetics and genetics across the prokaryote-eukaryote divide // Biology Direct 6: 35 (2011).

Конфликт направлений действия естественного отбора на разных уровнях и решение этой проблемы в рамках эндосимбиоза

Blackstone, N. W. Why did eukaryotes evolve only once? Genetic and energetic aspects of conflict and conflict mediation // Phil. Trans. R. Soc. B 368: 20120266 (2013).

Martin, W., and M. Müller The hydrogen hypothesis for the first eukaryote // Nature 392: 37–41 (1998).

Бактерии и использование энергии

Russell, J. B. The energy spilling reactions of bacteria and other organisms // Journal of Molecular Microbiology and Biotechnology 13: 1–11 (2007).

Глава 6.

Половое размножение и происхождение смерти

Скорость эволюции

Conway-Morris, S. The Cambrian “explosion”: Slow-fuse or megatonnage? // Proceedings National Academy Sciences USA 97: 4426–4429 (2000).

Gould, S. J., and N. Eldredge Punctuated equilibria: the tempo and mode of evolution reconsidered // Paleobiology 3: 115–151 (1977).

Nilsson, D.-E., and S. Pelger A pessimistic estimate of the time required for an eye to evolve // Proc. R. Soc. B 256: 53–58 (1994).

Половое размножение и структура популяции

Lahr, D. J., Parfrey, L. W., Mitchell, E. A., Katz, L. A., and E. Lara The chastity of amoeba: re-evaluating evidence for sex in amoeboid organisms // Proc. R. Soc. B 278: 2081–2090 (2011).

Maynard-Smith, J. The Evolution of Sex. Cambridge University Press, Cambridge (1978).

Ramesh, M. A., Malik, S. B., and J. M. Logsdon A phylogenomic inventory of meiotic genes: evidence for sex in Giardia and an early eukaryotic origin of meiosis // Current Biology 15: 185–191 (2005).

Takeuchi, N., Kaneko, K., and E. V. Koonin Horizontal gene transfer can rescue prokaryotes from Muller’s ratchet: benefit of DNA from dead cells and population subdivision // Genes Genomes Genetics 4: 325–339 (2014).

Происхождение интронов